ARBO provides utilities for preprocessing, visualization, and spatial clustering of metabolomics mass spectrometry imaging (MSI) data, with support for Python-based UMAP embedding through reticulate, ...

Spatial modelling methods have gained prominence with developments in high throughput imaging platforms. Multiplex immunofluorescence (mIF) provides the scope to examine interactions between tumor and ...

Astrocytes are important regulators of blood flow and play a key role in the response to injury and disease in the central nervous system (CNS). Despite having an understanding that structural changes ...

Reduced-dimension or spatial in situ scatter plots are widely employed in bioinformatics papers analyzing single-cell data to present phenomena or cell-conditions of interest in cell groups. When ...

If you’re trying to find ways to move away from single-use items for the sake of the planet, don’t overlook the humble AA (or AAA, or C, or D) battery. Rechargeable batteries can cost more than twice ...

Hello! Thank you for writing such a useful package. It is great not to have to switch between python and R to use umap :). I was wondering: is it possible to output the graph (i.e. the fuzzy ...